Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs144805855 chr7:45316771 A/ATGGGAC 2.6E-5 118 50.07 35 14.9 KM Plot
THYM rs144925362 chr7:29722479 G/T 4.59E-13 118 37.63 50.1 6 KM Plot
THYM rs145083988 chr2:30833240 T/TTAGAG 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs145228161 chr20:29524433 G/A 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs145564239 chr10:1538498 CAGTATCAACATCATCATT/C 0.000185 117 38.23 44.58 25.83 KM Plot
THYM rs145566624 chr4:9642951 C/A 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs145634297 chr2:30819096 G/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs145702483 chr8:50089730 GA/G 4.63E-10 117 46.27 50.1 25.83 KM Plot
THYM rs145719136 chr11:20031819 TG/T 4.03E-6 118 42.73 32.7 13.75 KM Plot
THYM rs145747490 chr4:70065801 G/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs146076018 chr4:70079372 T/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs146149665 chr19:43353447 T/C 0.000134 118 44.38 26 28.43 KM Plot
THYM rs146193880 chr11:20027046 C/T 3.35E-6 118 42.73 27.1 13.75 KM Plot
THYM rs146390487 chr18:33585899 G/GAGC 0.000228 118 49.4 35 51.23 KM Plot
THYM rs1465423 chr16:24772680 C/G 3.37E-6 119 31.37 30.03 48 KM Plot